We use advanced computational and database approaches to investigate microbial genomes and their evolution.

 

Latest

Evidence that inconsistent gene prediction can mislead analysis of dinoflagellate genomes
Chen Y, González-Pech RA, Stephens TG, Bhattacharya D, Chan CX
Journal of Phycology, online 12 November 2019. DOI • PDF • Data Site

 

A genomic view of the reef-building coral Porites lutea and its microbial symbionts
Robbins SJ, Singleton CM, Chan CX, Messer LF, Geers AU, Ying H, Baker A, Bell SC, Morrow KM, Ragan MA, Miller DJ, Forêt S, ReFuGe2020 Consortium, Voolstra CR, Tyson GW, Bourne DG
Nature Microbiology, 4: 2090-2100. • DOI • PubMed • PDF

Featured in:
• UQ News: Scientists decode DNA of coral and all its microscopic supporters
• IMB News: Genetics of coral a key to saving reefs from climate change
• Nature Microbiology Community – Behind the Paper: A genomic view of a coral holobiont
• Cosmos Magazine: Corals need a lot of help from their friends
• United Press International: DNA analysis details relationships between coral, algae and bacteria
• Sci-News: Researchers sequence genomes of reef-building coral and its microbial symbionts



 



Genome evolution of coral reef symbionts as intracellular residents
González-Pech RA, Bhattacharya D, Ragan MA, ChanCX
Trends in Ecology & Evolution, 34: 799-806. • DOI • PubMed • Full Text Access


Featured in:
• UQ News: Understanding relationship break-ups to protect the reef
  
• IMB News: Genomic data helping unlock secrets behind coral bleaching
• United Press International: Better understanding of coral-algae relationship could help prevent bleaching
• Brisbane Times: Good relationships under the sea could hold key to coral bleaching
• Sydney Morning Herald: Good relationships under the sea could hold key to coral bleaching
• Space Daily: Better understanding of coral-algae relationship could help prevent bleaching

 


Genomes of Symbiodiniaceae reveal extensive sequence divergence but conserved functions at family and genus levels
González-Pech RA, Chen Y, Stephens TG, Shah S, Mohamed AR, Lagorce R, Bhattacharya D, Ragan MA, Chan CX
bioRxiv 800482, 10 October 2019 • DOI • PDF

 


Structural rearrangements drive extensive genome divergence between symbiotic and free-living Symbiodinium
González-Pech RA, Stephens TG, Chen Y, Mohamed AR, Cheng Y, Burt DW, Bhattacharya D, Ragan MA, Chan CX
bioRxiv 783902, 26 September 2019 • DOI • PDF