We use advanced computational and database approaches to investigate microbial genomes and their evolution.



Benchmarking of alignment-free sequence comparison methods
Zielezinski A, Girgis HZ, Bernard G, Leimeister CA, Tang K, Dencker T, Lau AK, Röhling S, Choi J, Waterman MS, Comin M, Kim SH, Vinga S, Almeida JS, Chan CX, James BT, Sun F, Morgenstern B, Karlowski WM
Genome Biology, 20: 144. • DOIPubMedPDFAFproject site


Polarella glacialis genomes encode tandem repeats of single-exon genes with functions critical to adaptation of dinoflagellates
Stephens TG, González-Pech RA, Cheng Y, Mohamed AR, Bhattacharya D, Ragan MA, Chan CX
16 July 2019, bioRxiv 704437. • DOIPDF


Evidence that inconsistent gene prediction can mislead analysis of algal genomes
Chen Y, González-Pech RA, Stephens TG, Bhattacharya D, Chan CX
Version 2, 22 July 2019, bioRxiv 690040. • DOIPDF