Conference proceedings+



Full conference papers/abstracts

2015

9
Genome analysis of two Symbiodinium isolates
Chan CX, Stephens TG, Ling EYS, Forêt S, Morrow K, Bourne DG, Voolstra CR, Leggat W, Miller DJ, Ragan MA
2015. European Journal of Phycology 50 (S1): 57-58
Proceedings of the 6th European Phycological CongressDOIPDF

8
Scalable phylogenomic approaches to study algal evolution
Chan CX, Bernard G, Chalmers BDB, Ragan MA
2015. European Journal of Phycology 50 (S1): 150
Proceedings of the 6th European Phycological CongressDOIPDF

7
Analysis of Symbiodinium genomes reveals remarkable divergence
Chan CX, Stephens TG, Forêt S, Morrow K, Bourne DG, Voolstra CR, Leggat W, Miller DJ, Ragan MA
2015. Proceedings of Annual Meeting of Phycological Society of America p57 • Book PDF

2013

6
The Cyanophora genome: analysis of gene and small RNA content in a pivotal algal lineage
Bhattacharya D, Gross J, Price DC, Chan CX, Zelzion U
2013. Phycologia 52 (sp4): 10-11
Proceedings of the 10th International Phycological CongressDOIIssue PDF

2012

5
Recent advances in the Calliarthron genome: climate responses and cell wall evolution
Chan CX, Martone PT
2012. Journal of Phycology 48: S1-S2
Proceedings of the Annual Meeting of the Phycological Society of AmericaDOIIssue PDF

4
sRNAs of Cyanophora paradoxa and Chlamydomonas reinhardtii, a system genomics approach to understand algal evolution
Gross J, Wajid S, Price D, Chan CX, Bhattacharya D
2012. Journal of Phycology 48: S20
Proceedings of the Annual Meeting of the Phycological Society of AmericaDOIIssue PDF

2008

3
A phylogenomic approach for studying plastid endosymbiosis
Moustafa A*, Chan CX*, Danforth M, Zear D, Ahmed H, Jadhav N, Savage T, Bhattacharya D (*equal contribution)
2008. Genome Informatics 21: 165-176 • PubMedPDF

 

2
Large-scale detection of recombination in nucleotide sequences
Chan CX, Beiko RG, Ragan MA
2008. AIP Conference Proceedings 971(1): 101-104
Proceedings of the International Conference on Mathematical BiologyDOIPDF

2007

1
A two-phase approach for detecting recombination in nucleotide sequences
Chan CX, Beiko RG, Ragan MA
2007. Proceedings of the 1st Southern African Bioinformatics Workshop pp. 9-16. • RepositoryPDF


Other peer-reviewed articles

2011

2
Plastid origin and evolution
Chan CX, Bhattacharya D
In: Encyclopedia of Life Sciences (eLS)
2011. John Wiley & Sons, Ltd, Chichester http://www.els.net/ DOI:10.1002/9780470015902.a002363PDF

2010

1
The origin of plastids
Chan CX, Bhattacharya D
Nature Education 3(9):84. • WebPDF


Select preprint articles

2017

1
Symbiodinium genomes reveal adaptive evolution of functions related to symbiosis
Liu H, Stephens TG, González-Pech RA, Beltran VH, Lapeyre B, Bongaerts P, Cooke I, Bourne DG, Forêt S, Miller DJ, van Oppen MJH, Voolstra CR, Ragan MA, Chan CX
bioRxiv 198762. • DOIPDF


 

2
K-mer similarity, networks of microbial genomes and taxonomic rank
Bernard G, Greenfield P, Ragan MA, Chan CX
bioRxiv 125237. • DOIPDF

 

2015

3
PhySortR: a fast, flexible tool for sorting phylogenetic trees in R
Stephens TG, Bhattacharya D, Ragan MA, Chan CX
PeerJ PrePrints 3:e1609v1. • DOIPDF