Software

GitHub: https://github.com/chanlab-genomics

PhySortR
PhySortR: a fast, flexible tool for sorting phylogenetic trees in R • link

jD2Stat
An alignment-free tool for generating pairwise distances of molecular sequences • link

WOOF
A word-oriented approach to alignment validation • link

 


Datasets

 

4
Genome assemblies and the associated annotations for seven Symbiodinium isolates
González-Pech RA, Ragan MA, Bhattacharya D, Chan CX (2021)
Genome assemblies and the associated annotations for seven Symbiodinium isolates • DOIPaper DOIData @ NCBI GenBank

3
Genome assemblies and the associated annotations for Polarella glacialis CCMP1383 and CCMP2088
Stephens TG, Bhattacharya D, Ragan MA, Chan CX (2020)
Genome assemblies and the associated annotations for Polarella glacialis CCMP1383 and CCMP2088 • DOIPaper DOIData @ NCBI GenBank

2
Revised genome sequences and annotations of six Symbiodiniaceae taxa
Chen Y, González-Pech RA, Stephens TG, Bhattacharya D, Chan CX (2019)
Revised genome sequences and annotations of six Symbiodiniaceae taxa • DOIPaper DOI

1
143 prokaryote genomes
Bernard G, Chan CX, Ragan MA (2016)
143 completely sequenced genomes of Bacteria and Archaea • DOIPaper DOI