Software

GitHub: https://github.com/chanlab-genomics

PhySortR
PhySortR: a fast, flexible tool for sorting phylogenetic trees in R • link

jD2Stat
An alignment-free tool for generating pairwise distances of molecular sequences • link

WOOF
A word-oriented approach to alignment validation • link

 

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Datasets

 

10
Long non-coding RNAs of three dinoflagellate species
Chen Y, Dougan KE, Nguyen Q, Bhattacharya D, Chan CX (2023)
• DOI • Paper DOI

9
Genome and transcriptome data for bloom-forming dinoflagellate Prorocentrum cordatum CCMP1329
Dougan KE, Deng ZL, Woehlbrand L, Reuse C, Bunk B, Chen Y, Hartlich J, Hiller K, John U, Kalvelage J, Mansky J, Neumann-Schaal M, Overmann J, Petersen J, Sanchez-Garcia S, Schmidt-Hohagen K, Shah S, Sproer C, Sztajer H, Wang H, Bhattacharya D, Rabus R, Jahn D, Chan CX, Wagner-Doebler I (2023)
• DOI • Paper DOI • Data @ NCBI GenBank

8
Effrenium voratum genomes and genes
Shah S, Chan CX (2023)
• DOI • Paper DOI • Data @ NCBI GenBank

7
Improved assembled genome of Cladocopium goreaui SCF055
Chen Y, Shah S, Dougan KE, van Oppen MJH, Bhattacharya D, Chan CX (2022)
• DOI • Paper DOI • Data @ NCBI GenBank

6
Genomic resources of seven Australian weed species of national significance
Shah S, Lonhienne T, Murray CE, Chen Y, Dougan KE, Low YS, Williams CM, Schenk G, Walter GH, Guddat LW, Chan CX (2022)
• DOI • Paper DOI • Data @ NCBI GenBank

5
Genome assemblies and the associated annotations for seven Symbiodinium isolates
González-Pech RA, Ragan MA, Bhattacharya D, Chan CX (2021)
DOI • Paper DOI • Data @ NCBI GenBank

4
Genome assemblies and the associated annotations for Polarella glacialis CCMP1383 and CCMP2088
Stephens TG, Bhattacharya D, Ragan MA, Chan CX (2020)
DOI • Paper DOI • Data @ NCBI GenBank

3
Revised genome sequences and annotations of six Symbiodiniaceae taxa
Chen Y, González-Pech RA, Stephens TG, Bhattacharya D, Chan CX (2019)
DOI • Paper DOI

2
143 completely sequenced genomes of Bacteria and Archaea
Bernard G, Chan CX, Ragan MA (2016)
DOI • Paper DOI

1
Dataset of alignments and trees from Staphylococcus gene transfer analysis
Chan CX, Beiko RG, Ragan MA (2011)
DOI • Paper DOI